Canada BioGenome Project
The Canada BioGenome Project is part of an international consortium—the Earth BioGenome Project—which aims to sequence the genomes of all the eukaryotic biodiversity. Canada possesses significant biodiversity, with ~80,000 plant and animal species in environments ranging from desert to the arctic. Many of these species are under threat due to rapid changes in climate and other human-led impacts on our environment. A common thread across conservation strategies is the need for genomic tools to address knowledge gaps related to species evolution, adaption, viability and genetic diversity. A reference-quality whole genome sequence is the foundation for such genetic analysis and the subsequent development of these management tools.
The Canada BioGenome Project aims to make available 400 high quality reference genomes for Canadian species that represent a diverse domain of life. Through collaborations with species experts and end users, we will ensure that species selected are based on criteria including their need for conservation and remediation, and their economic, Indigenous community, and socio-cultural relevance.
| Image | Species | Accession | Annotation method | Annotation | Proteins | Transcripts | Softmasked genome | Repeat library | Other data | View in browser | BUSCO completeness | BUSCO lineage | Alternate haplotype |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Adelges tsugae | GCA_045999825.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:97.4%[S:96.2%,D:1.2%],F:0.8%,M:1.8%,n:2510 | hemiptera_odb10 | – |
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Agriotes ferrugineipennis | GCA_044115295.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:91.8%[S:90.5%,D:1.3%],F:2.5%,M:5.7%,n:3754 | endopterygota_odb12 | – |
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Agriotes lineatus | GCA_040955365.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:90.3%[S:78.6%,D:11.7%],F:2.7%,M:7.0%,n:2124 | endopterygota_odb10 | – |
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Agriotes mancus | GCA_041228495.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:95.8%[S:86.2%,D:9.6%],F:1.4%,M:2.8%,n:2124 | endopterygota_odb10 | – |
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Agriotes obscurus | GCA_040955315.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:88.3%[S:85.3%,D:3.0%],F:3.0%,M:8.7%,n:3754 | endopterygota_odb12 | – |
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Agriotes pubescens | GCA_044115395.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:84.5%[S:76.8%,D:7.7%],F:6.7%,M:8.8%,n:3754 | endopterygota_odb12 | – |
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Anthonomus rubi | GCA_050242925.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:81.0%[S:76.8%,D:4.2%],F:8.2%,M:10.8%,n:3754 | endopterygota_odb12 | – |
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Antilocapra americana | GCA_007570785.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:96.1%[S:93.1%,D:3.0%],F:0.8%,M:3.1%,n:13335 | cetartiodactyla_odb10 | – |
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Arctozenus risso | GCA_040955285.2 | Ensembl Genebuild | – | – | – | – | Repeatmodeler | FTP dumps | Coming soon! | C:60.9%[S:56.8%,D:4.1%],F:6.0%,M:33.1%,n:3640 | actinopterygii_odb10 | – |
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Brosme brosme | GCA_040955155.2 | Ensembl Genebuild | – | – | – | – | Repeatmodeler | FTP dumps | Coming soon! | C:75.0%[S:72.0%,D:3.0%],F:3.2%,M:21.8%,n:3640 | actinopterygii_odb10 | – |
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Buteo regalis | GCA_037951015.2 | Ensembl Genebuild | GTF, GFF3 | – | – | FASTA | Repeatmodeler | FTP dumps | Coming soon! | C:89.1%[S:88.8%,D:0.3%],F:5.0%,M:5.9%,n:6251 | aves_odb12 | – |
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Cancer borealis | GCA_036785275.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:88.9%[S:85.1%,D:3.8%],F:3.7%,M:7.4%,n:1013 | arthropoda_odb10 | – |
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Carcharodon carcharias | GCA_051200495.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.8%[S:94.5%,D:0.3%],F:3.1%,M:2.1%,n:672 | metazoa_odb12 | – |
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Caretta caretta | GCA_023653815.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:96.8%[S:96.0%,D:0.8%],F:0.8%,M:2.4%,n:7480 | sauropsida_odb10 | – |
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Chelydra serpentina | GCA_037349315.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:94.1%[S:91.3%,D:2.8%],F:1.4%,M:4.5%,n:7480 | sauropsida_odb10 | – |
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Chelydra serpentina | GCA_037349315.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:95.3%[S:93.2%,D:2.1%],F:1.7%,M:3.0%,n:6118 | sauropsida_odb12 | – |
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Choristoneura rosaceana | GCA_037349135.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:94.9%[S:94.2%,D:0.7%],F:3.0%,M:2.2%,n:5760 | lepidoptera_odb12 | – |
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Choristoneura rosaceana | GCA_037349165.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:96.4%[S:95.5%,D:0.9%],F:2.2%,M:1.5%,n:5760 | lepidoptera_odb12 | – |
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Chrysemys picta bellii | GCA_037349265.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:97.5%[S:95.6%,D:1.9%],F:0.6%,M:1.9%,n:7480 | sauropsida_odb10 | – |
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Chrysemys picta bellii | GCA_037349265.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:96.7%[S:95.0%,D:1.7%],F:1.1%,M:2.3%,n:6118 | sauropsida_odb12 | – |
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Clemmys guttata | GCA_040208395.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:94.1%[S:92.5%,D:1.7%],F:2.4%,M:3.5%,n:6118 | sauropsida_odb12 | – |
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Clethrionomys rutilus | GCA_040207285.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:95.0%[S:93.1%,D:1.9%],F:0.6%,M:4.4%,n:13798 | glires_odb10 | – |
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Colletes wilmattae | GCA_051313905.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.0%[S:93.8%,D:0.3%],F:3.3%,M:2.7%,n:5920 | hymenoptera_odb12 | – |
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Coprinus comatus | GCA_051820235.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:86.7%[S:76.6%,D:10.1%],F:2.8%,M:10.5%,n:2409 | basidiomycota_odb12 | – |
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Crossaster papposus | GCA_037893245.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:94.3%[S:83.8%,D:10.5%],F:3.2%,M:2.5%,n:954 | metazoa_odb10 | – |
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Cyrtodaria siliqua | GCA_037043455.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:76.9%[S:65.2%,D:11.7%],F:4.3%,M:18.8%,n:5295 | mollusca_odb10 | – |
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Delphinapterus leucas | GCA_035221355.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.3%[S:93.0%,D:1.3%],F:0.8%,M:4.9%,n:13335 | cetartiodactyla_odb10 | – |
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Doris montereyensis | GCA_037039925.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:44.4%[S:44.2%,D:0.2%],F:3.5%,M:52.1%,n:5295 | mollusca_odb10 | – |
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Emys blandingii | GCA_036785055.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:91.6%[S:90.3%,D:1.3%],F:2.2%,M:6.2%,n:7480 | sauropsida_odb10 | – |
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Epeolus ainsliei | GCA_051313945.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:84.7%[S:50.9%,D:33.8%],F:9.0%,M:6.2%,n:5920 | hymenoptera_odb12 | – |
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Eumetopias jubatus | GCA_037043125.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:95.9%[S:93.2%,D:2.7%],F:0.5%,M:3.6%,n:14502 | carnivora_odb10 | – |
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Euthyatira pudens | GCA_049308145.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:96.6%[S:96.3%,D:0.3%],F:1.8%,M:1.6%,n:5760 | lepidoptera_odb12 | – |
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Foetorepus agassizii | GCA_040954885.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:81.8%[S:80.3%,D:1.5%],F:3.0%,M:15.2%,n:3640 | actinopterygii_odb10 | – |
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Formica aserva | GCA_037039905.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:94.3%[S:91.4%,D:2.9%],F:2.1%,M:3.6%,n:5991 | hymenoptera_odb10 | – |
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Gaultheria shallon | GCA_046119095.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:95.0%[S:61.6%,D:33.5%],F:4.3%,M:0.7%,n:822 | viridiplantae_odb12 | – |
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Gluphisia lintneri | GCA_050230005.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:95.4%[S:95.1%,D:0.3%],F:2.5%,M:2.1%,n:5760 | lepidoptera_odb12 | – |
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Glyptemys insculpta | GCA_032172135.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:90.7%[S:88.9%,D:1.8%],F:2.1%,M:7.2%,n:7480 | sauropsida_odb10 | – |
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Graptemys geographica | GCA_037349215.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:92.1%[S:89.6%,D:2.5%],F:2.6%,M:5.3%,n:6118 | sauropsida_odb12 | – |
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Hippasteria phrygiana | GCA_037893225.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:92.0%[S:89.9%,D:2.1%],F:4.5%,M:3.5%,n:954 | metazoa_odb10 | – |
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Hippoglossoides platessoides | GCA_051362235.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.4%[S:91.2%,D:3.2%],F:1.9%,M:3.7%,n:3640 | actinopterygii_odb10 | – |
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Larinus minutus | GCA_041228525.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:96.3%[S:95.0%,D:1.3%],F:1.2%,M:2.5%,n:2124 | endopterygota_odb10 | – |
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Leptoclinus maculatus | GCA_032191485.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:93.2%[S:91.3%,D:1.9%],F:2.2%,M:4.6%,n:3640 | actinopterygii_odb10 | – |
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Leucoraja ocellata | GCA_036785375.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:85.7%[S:55.5%,D:30.2%],F:4.1%,M:10.2%,n:3354 | vertebrata_odb10 | – |
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Lophius americanus | GCA_037951165.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:91.7%[S:90.1%,D:1.6%],F:3.2%,M:5.1%,n:3640 | actinopterygii_odb10 | – |
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Lophius americanus | GCA_037951165.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:94.4%[S:92.5%,D:1.9%],F:2.0%,M:3.6%,n:3640 | actinopterygii_odb10 | – |
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Lycia ursaria | GCA_049308195.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.6%[S:94.2%,D:0.3%],F:2.9%,M:2.5%,n:5760 | lepidoptera_odb12 | – |
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Mactromeris polynyma | GCA_032209605.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:80.4%[S:78.4%,D:2.0%],F:2.8%,M:16.8%,n:5295 | mollusca_odb10 | – |
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Moxostoma hubbsi | GCA_032164185.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:97.9%[S:48.3%,D:49.6%],F:0.5%,M:1.6%,n:3640 | actinopterygii_odb10 | – |
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Oemleria cerasiformis | GCA_037349345.2 | Helixer | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:90.6%[S:88.8%,D:1.8%],F:2.3%,M:7.1%,n:822 | viridiplantae_odb12 | – |
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Pantherophis gloydi | GCA_037215915.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:89.0%[S:86.8%,D:2.2%],F:1.1%,M:9.9%,n:7480 | sauropsida_odb10 | – |
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Ribes sanguineum | GCA_048173275.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.2%[S:88.2%,D:6.0%],F:3.6%,M:2.2%,n:822 | viridiplantae_odb12 | – |
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Salvelinus alpinus oquassa | GCA_036784965.1 | Ensembl Genebuild | – | – | – | FASTA | – | FTP dumps | Coming soon! | C:85.7%[S:56.4%,D:29.3%],F:1.9%,M:12.4%,n:3640 | actinopterygii_odb10 | – |
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Salvelinus alpinus oquassa | GCA_036784965.1 | Ensembl Genebuild | – | – | – | FASTA | – | FTP dumps | beta.ensembl.org | C:85.7%[S:56.4%,D:29.3%],F:1.9%,M:12.4%,n:3640 | actinopterygii_odb10 | – |
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Sebastes fasciatus | GCA_047301235.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:92.8%[S:91.3%,D:1.5%],F:2.5%,M:4.7%,n:3640 | actinopterygii_odb10 | – |
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Serripes groenlandicus | GCA_031761405.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:74.4%[S:55.4%,D:19.0%],F:4.2%,M:21.4%,n:5295 | mollusca_odb10 | – |
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Squalus suckleyi | GCA_026260435.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:92.6%[S:89.3%,D:3.3%],F:4.0%,M:3.4%,n:3354 | vertebrata_odb10 | – |
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Sternotherus odoratus | GCA_032164245.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:92.2%[S:91.3%,D:0.9%],F:1.1%,M:6.7%,n:7480 | sauropsida_odb10 | – |
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Strix nebulosa | GCA_051313305.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:92.5%[S:89.6%,D:2.9%],F:2.9%,M:4.6%,n:6251 | aves_odb12 | – |
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Urophycis tenuis | GCA_036785325.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:82.9%[S:69.8%,D:13.1%],F:3.7%,M:13.4%,n:3640 | actinopterygii_odb10 | – |
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Xylocopa virginica | GCA_051362155.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:86.7%[S:86.4%,D:0.3%],F:3.2%,M:10.1%,n:5920 | hymenoptera_odb12 | – |