Aquatic Symbiosis Genomics (ASG) Project
Aquatic Symbiosis Genomics Project is a global collaboration to generate high quality genome sequences for a wide range of eukaryotes and their microbial symbionts. Launched under the Symbiosis in Aquatic Systems Initiative of the Gordon and Betty Moore Foundation, the ASG Project brings together researchers from across the globe who hope to use these reference genomes to augment and extend their analyses of the dynamics, mechanisms and environmental importance of symbiosis. Applying large-scale, high-throughput sequencing and assembly technologies, the ASG collaboration aims tol assemble and annotate the genomes of 500 symbiotic organisms – both the “hosts” and the microbial symbionts with which they associate. These data will be released openly to benefit all who work on symbiosis, from conservation geneticists to those interested in the origin of the eukaryotic cell.
At Ensembl, we annotate the protein-coding and non-coding RNA gene structures using re-engineered versions of our Gene Annotation System (Aken et al, 2017) optimised for vertebrates and for non-vertebrates. When a species lacks transcriptomic data, we run BRAKER2 to generate hint-guided ab initio gene predictions of protein-coding genes, in the default protein mode (see the blog post for more information). After QC, genomes and annotations are made available via our FTP site (see table below) before subsequently being made available in the Ensembl Genome Browser.
| Image | Species | Accession | Annotation method | Annotation | Proteins | Transcripts | Softmasked genome | Repeat library | Other data | View in browser | BUSCO completeness | BUSCO lineage | Alternate haplotype |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Acropora austera | GCA_964273435.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.5%[S:93.3%,D:1.2%],F:3.1%,M:2.4%,n:954 | metazoa_odb10 | – |
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Acropora cervicornis | GCA_964034985.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.2%[S:93.7%,D:0.5%],F:3.0%,M:2.8%,n:954 | metazoa_odb10 | – |
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Acropora hyacinthus | GCA_964291705.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:95.0%[S:94.2%,D:0.8%],F:2.2%,M:2.8%,n:954 | metazoa_odb10 | – |
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Acropora loripes | GCA_965214385.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.9%[S:93.1%,D:1.8%],F:2.2%,M:2.9%,n:954 | metazoa_odb10 | – |
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Acropora muricata | GCA_964332325.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:89.2%[S:87.9%,D:1.3%],F:5.2%,M:5.6%,n:954 | metazoa_odb10 | – |
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Acropora palmata | GCA_964030605.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.6%[S:93.1%,D:1.5%],F:2.7%,M:2.7%,n:954 | metazoa_odb10 | – |
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Acropora spathulata | GCA_964019555.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:95.2%[S:94.4%,D:0.8%],F:2.4%,M:2.4%,n:954 | metazoa_odb10 | – |
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Agelas clathrodes | GCA_965279245.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:79.3%[S:76.7%,D:2.6%],F:5.1%,M:15.6%,n:954 | metazoa_odb12 | – |
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Agelas conifera | GCA_965122385.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:78.0%[S:74.3%,D:3.7%],F:7.5%,M:14.5%,n:954 | metazoa_odb10 | – |
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Agelas oroides | GCA_949130485.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:84.9%[S:82.4%,D:2.5%],F:5.2%,M:9.9%,n:954 | metazoa_odb10 | – |
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Agelas tubulata | GCA_964245335.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:86.6%[S:84.1%,D:2.5%],F:4.8%,M:8.6%,n:954 | metazoa_odb10 | – |
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Alviniconcha strummeri | GCA_963584105.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:72.5%[S:70.2%,D:2.3%],F:3.6%,M:23.9%,n:5295 | mollusca_odb10 | – |
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Amphiduros pacificus | GCA_949316495.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:98.4%[S:97.1%,D:1.3%],F:1.0%,M:0.6%,n:954 | metazoa_odb10 | – |
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Anodontia alba | GCA_964016985.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:73.4%[S:71.9%,D:1.5%],F:4.5%,M:22.1%,n:5295 | mollusca_odb10 | – |
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Anthopleura xanthogrammica | GCA_964019055.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:96.7%[S:95.7%,D:1.0%],F:0.9%,M:2.4%,n:954 | metazoa_odb10 | – |
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Aplysina aerophoba | GCA_949841015.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:77.8%[S:76.0%,D:1.8%],F:7.7%,M:14.5%,n:954 | metazoa_odb10 | – |
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Aplysina cauliformis | GCA_965643675.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:76.6%[S:75.6%,D:1.0%],F:12.2%,M:11.2%,n:672 | metazoa_odb12 | – |
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Asconema megaatrialia | GCA_965113215.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:54.5%[S:52.6%,D:1.9%],F:4.8%,M:40.7%,n:954 | metazoa_odb10 | – |
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Aurelia sp. 4 Dawson et al 2005 | GCA_964019985.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:89.9%[S:89.6%,D:0.3%],F:5.2%,M:4.9%,n:954 | metazoa_odb10 | – |
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Bathymodiolus brooksi | GCA_963680875.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:88.4%[S:86.6%,D:1.8%],F:2.9%,M:8.7%,n:5295 | mollusca_odb10 | – |
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Bathymodiolus heckerae | GCA_965117275.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | Coming soon! | C:88.2%[S:87.0%,D:1.2%],F:7.1%,M:4.7%,n:4421 | mollusca_odb12 | – |
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Bathymodiolus septemdierum | GCA_963383655.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:91.9%[S:89.9%,D:2.0%],F:2.2%,M:5.9%,n:5295 | mollusca_odb10 | – |
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Blastomussa wellsi | GCA_947652115.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:88.8%[S:0.2%,D:88.6%],F:5.5%,M:5.7%,n:954 | metazoa_odb10 | – |
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Bolosoma cyanae | GCA_964258925.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:59.4%[S:58.4%,D:1.0%],F:3.7%,M:36.9%,n:954 | metazoa_odb10 | – |
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Callogorgia gracilis | GCA_964204845.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.2%[S:93.5%,D:0.7%],F:2.0%,M:3.8%,n:954 | metazoa_odb10 | – |
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Cassiopea sp. PORT0000214 | GCA_964204825.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:92.4%[S:92.0%,D:0.4%],F:2.6%,M:5.0%,n:954 | metazoa_odb10 | – |
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Catostylus mosaicus | GCA_964019065.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:92.0%[S:91.9%,D:0.1%],F:2.7%,M:5.3%,n:954 | metazoa_odb10 | – |
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Chondrilla caribensis | GCA_964020155.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:83.6%[S:81.9%,D:1.7%],F:5.2%,M:11.2%,n:954 | metazoa_odb10 | – |
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Chondrosia reniformis | GCA_947172415.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:84.2%[S:83.5%,D:0.7%],F:2.8%,M:13.0%,n:954 | metazoa_odb10 | – |
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Cladonia diversa | GCA_964605785.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:88.9%[S:88.8%,D:0.1%],F:3.6%,M:7.5%,n:2826 | ascomycota_odb12 | – |
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Cladonia portentosa | GCA_965153415.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:89.7%[S:89.4%,D:0.3%],F:3.1%,M:7.2%,n:2826 | ascomycota_odb12 | – |
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Clathrolucina costata | GCA_965112175.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:83.7%[S:81.6%,D:2.1%],F:3.2%,M:13.1%,n:5295 | mollusca_odb10 | – |
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Cliona orientalis | GCA_963930775.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:87.2%[S:85.0%,D:2.2%],F:3.9%,M:8.9%,n:954 | metazoa_odb10 | – |
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Condylactis gigantea | GCA_964258915.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.5%[S:93.6%,D:0.9%],F:1.4%,M:4.1%,n:954 | metazoa_odb10 | – |
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Corticium candelabrum | GCA_963422355.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:86.0%[S:85.2%,D:0.8%],F:5.5%,M:8.5%,n:954 | metazoa_odb10 | – |
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Crambe crambe | GCA_963924555.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:87.0%[S:84.9%,D:2.1%],F:4.5%,M:8.5%,n:954 | metazoa_odb10 | – |
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Ctena imbricatula | GCA_965111775.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | Coming soon! | C:67.1%[S:65.9%,D:1.2%],F:7.1%,M:25.8%,n:5295 | mollusca_odb10 | – |
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Cymbastela concentrica | GCA_965112925.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:83.0%[S:80.8%,D:2.2%],F:6.3%,M:10.7%,n:954 | metazoa_odb10 | – |
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Cyphastrea salae | GCA_964194085.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.9%[S:94.0%,D:0.9%],F:2.1%,M:3.0%,n:954 | metazoa_odb10 | – |
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Dendrogyra cylindrus | GCA_964187815.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.0%[S:93.5%,D:0.5%],F:2.2%,M:3.8%,n:954 | metazoa_odb10 | – |
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Diacarnus erythraeanus | GCA_964016965.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:83.5%[S:80.8%,D:2.7%],F:6.0%,M:10.5%,n:954 | metazoa_odb10 | – |
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Duncanopsammia axifuga | GCA_964258685.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:95.6%[S:93.6%,D:2.0%],F:1.9%,M:2.5%,n:954 | metazoa_odb10 | – |
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Dysidea avara | GCA_963678975.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:83.9%[S:80.9%,D:3.0%],F:5.9%,M:10.2%,n:954 | metazoa_odb10 | – |
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Dysidea avara | GCA_963678975.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:84.0%[S:80.9%,D:3.1%],F:5.6%,M:10.4%,n:954 | metazoa_odb10 | – |
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Echinopora horrida | GCA_964199735.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:90.3%[S:87.6%,D:2.7%],F:4.9%,M:4.8%,n:954 | metazoa_odb10 | – |
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Elysia crispata | GCA_963854125.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:77.2%[S:76.0%,D:1.2%],F:2.6%,M:20.2%,n:5295 | mollusca_odb10 | – |
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Eumandya parva | GCA_964059275.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:82.4%[S:80.5%,D:1.9%],F:2.4%,M:15.2%,n:5295 | mollusca_odb10 | – |
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Eunapius fragilis | GCA_963681505.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:64.5%[S:62.2%,D:2.3%],F:4.9%,M:30.6%,n:954 | metazoa_odb10 | – |
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Eunicella verrucosa | GCA_964261655.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:91.8%[S:90.6%,D:1.2%],F:2.8%,M:5.4%,n:954 | metazoa_odb10 | – |
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Fragum fragum | GCA_946902895.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:76.2%[S:75.0%,D:1.2%],F:3.6%,M:20.2%,n:5295 | mollusca_odb10 | – |
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Fragum sueziense | GCA_963680895.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:78.7%[S:75.8%,D:2.9%],F:3.1%,M:18.2%,n:5295 | mollusca_odb10 | – |
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Fragum whitleyi | GCA_948146395.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:82.0%[S:80.9%,D:1.1%],F:2.9%,M:15.1%,n:5295 | mollusca_odb10 | – |
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Galaxea fascicularis | GCA_948470475.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:87.7%[S:0.5%,D:87.2%],F:4.0%,M:8.3%,n:954 | metazoa_odb10 | – |
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Geodia parva | GCA_964274975.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:82.5%[S:79.7%,D:2.8%],F:4.7%,M:12.8%,n:954 | metazoa_odb10 | – |
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Geodia phlegraei | GCA_964341465.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:77.1%[S:75.5%,D:1.6%],F:5.7%,M:17.2%,n:954 | metazoa_odb10 | – |
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Gigantidas childressi | GCA_965235005.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:89.4%[S:87.9%,D:1.5%],F:6.7%,M:3.9%,n:4421 | mollusca_odb12 | – |
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Halichondria panicea | GCA_963675165.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:85.7%[S:84.3%,D:1.4%],F:4.4%,M:9.9%,n:954 | metazoa_odb10 | – |
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Halichondria panicea | GCF_963675165.1 | Import | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:91.7%[S:89.7%,D:2.0%],F:1.3%,M:7.0%,n:954 | metazoa_odb10 | – |
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Haliclona indistincta | GCA_964017065.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:78.2%[S:76.4%,D:1.8%],F:8.4%,M:13.4%,n:954 | metazoa_odb10 | – |
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Halisarca caerulea | GCA_963170055.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:76.6%[S:74.6%,D:2.0%],F:6.4%,M:17.0%,n:954 | metazoa_odb10 | – |
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Hippopus hippopus | GCA_965239675.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:93.6%[S:93.3%,D:0.3%],F:5.0%,M:1.4%,n:4421 | mollusca_odb12 | – |
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Hydra viridissima | GCA_964215635.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:79.9%[S:78.2%,D:1.7%],F:4.8%,M:15.3%,n:954 | metazoa_odb10 | – |
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Ianthella basta | GCA_964019415.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:81.9%[S:79.1%,D:2.8%],F:6.2%,M:11.9%,n:954 | metazoa_odb10 | – |
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Lamellibrachia columna | GCA_963662155.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:96.4%[S:95.4%,D:1.0%],F:2.1%,M:1.5%,n:954 | metazoa_odb10 | – |
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Lichina confinis | GCA_965642285.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:87.8%[S:87.4%,D:0.4%],F:4.4%,M:7.8%,n:2826 | ascomycota_odb12 | – |
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Lichina pygmaea | GCA_963422465.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:91.7%[S:91.6%,D:0.1%],F:1.6%,M:6.7%,n:1706 | ascomycota_odb10 | – |
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Lucinella divaricata | GCA_964194035.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:85.9%[S:83.1%,D:2.8%],F:2.1%,M:12.0%,n:5295 | mollusca_odb10 | – |
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Lucinisca nassula | GCA_963580285.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:75.0%[S:72.5%,D:2.5%],F:4.7%,M:20.3%,n:5295 | mollusca_odb10 | – |
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Lycopodina hypogea | GCA_963969325.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:68.4%[S:66.7%,D:1.7%],F:13.4%,M:18.2%,n:954 | metazoa_odb10 | – |
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Madracis auretenra | GCA_964059495.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:93.9%[S:92.9%,D:1.0%],F:2.2%,M:3.9%,n:954 | metazoa_odb10 | – |
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Madracis senaria | GCA_964656595.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:95.0%[S:94.1%,D:0.9%],F:2.2%,M:2.8%,n:954 | metazoa_odb10 | – |
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Magelona johnstoni | GCA_963942565.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:92.8%[S:89.6%,D:3.2%],F:3.8%,M:3.4%,n:954 | metazoa_odb10 | – |
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Mastigias papua | GCA_964019165.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:83.1%[S:80.9%,D:2.2%],F:8.1%,M:8.8%,n:954 | metazoa_odb10 | – |
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Meandrina meandrites | GCA_963693305.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:95.5%[S:94.0%,D:1.5%],F:1.5%,M:3.0%,n:954 | metazoa_odb10 | – |
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Micromussa lordhowensis | GCA_964020085.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.2%[S:92.8%,D:1.4%],F:2.1%,M:3.7%,n:954 | metazoa_odb10 | – |
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Millepora alcicornis | GCA_965112645.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:71.9%[S:71.1%,D:0.8%],F:11.0%,M:17.1%,n:954 | metazoa_odb10 | – |
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Millepora complanata | GCA_964656905.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:85.6%[S:84.1%,D:1.5%],F:4.2%,M:10.2%,n:954 | metazoa_odb10 | – |
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Millepora dichotoma | GCA_965112555.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:75.6%[S:74.1%,D:1.5%],F:7.9%,M:16.5%,n:954 | metazoa_odb10 | – |
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Montipora capitata | GCA_949126865.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:94.2%[S:93.5%,D:0.7%],F:2.4%,M:3.4%,n:954 | metazoa_odb10 | rapid.ensembl.org |
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Montipora capricornis | GCA_965112405.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:88.2%[S:86.7%,D:1.5%],F:6.6%,M:5.2%,n:954 | metazoa_odb10 | – |
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Muricea muricata | GCA_963855995.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:85.4%[S:80.5%,D:4.9%],F:4.4%,M:10.2%,n:954 | metazoa_odb10 | – |
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Oasisia sp. SBJ-2009 | GCA_964017155.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.8%[S:93.9%,D:0.9%],F:3.2%,M:2.0%,n:954 | metazoa_odb10 | – |
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Oculina arbuscula | GCA_964656845.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:95.7%[S:94.3%,D:1.4%],F:1.5%,M:2.8%,n:954 | metazoa_odb10 | – |
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Orbicella franksi | GCA_964199315.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:95.0%[S:94.4%,D:0.6%],F:1.8%,M:3.2%,n:954 | metazoa_odb10 | – |
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Oscarella lobularis | GCA_947507565.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:80.3%[S:78.9%,D:1.4%],F:4.5%,M:15.2%,n:954 | metazoa_odb10 | – |
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Osedax fenrisi | GCA_964019155.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:87.6%[S:86.7%,D:0.9%],F:5.1%,M:7.3%,n:954 | metazoa_odb10 | – |
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Palythoa caribaeorum | GCA_965234985.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.2%[S:92.7%,D:1.5%],F:2.6%,M:3.2%,n:954 | metazoa_odb10 | – |
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Pelagia noctiluca | GCA_963924455.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:92.0%[S:91.8%,D:0.2%],F:4.1%,M:3.9%,n:954 | metazoa_odb10 | – |
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Phacoides pectinatus | GCA_965230325.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:90.9%[S:89.5%,D:1.4%],F:6.2%,M:2.9%,n:4421 | mollusca_odb12 | – |
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Phakellia robusta | GCA_964264905.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:77.9%[S:76.2%,D:1.7%],F:7.8%,M:14.3%,n:954 | metazoa_odb10 | – |
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Phakellia ventilabrum | GCA_964276705.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:87.2%[S:85.7%,D:1.5%],F:4.2%,M:8.6%,n:954 | metazoa_odb10 | – |
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Phyllodoce medipapillata | GCA_964656445.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:93.5%[S:92.7%,D:0.8%],F:3.2%,M:3.3%,n:954 | metazoa_odb10 | – |
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Plumapathes pennacea | GCA_964036295.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:95.5%[S:94.8%,D:0.7%],F:1.8%,M:2.7%,n:954 | metazoa_odb10 | – |
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Porites cylindrica | GCA_964035525.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.8%[S:93.9%,D:0.9%],F:1.8%,M:3.4%,n:954 | metazoa_odb10 | – |
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Porites divaricata | GCA_964035745.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:93.3%[S:92.8%,D:0.5%],F:3.9%,M:2.8%,n:954 | metazoa_odb10 | – |
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Porites lutea | GCA_958299795.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.7%[S:93.3%,D:1.4%],F:2.4%,M:2.9%,n:954 | metazoa_odb10 | rapid.ensembl.org |
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Porites rus | GCA_964035705.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.7%[S:93.9%,D:0.8%],F:2.1%,M:3.2%,n:954 | metazoa_odb10 | – |
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Protula sp. h YS-2021 | GCA_949752745.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:93.6%[S:93.3%,D:0.3%],F:3.6%,M:2.8%,n:954 | metazoa_odb10 | – |
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Pterobdella sp. o SKG-2022 | GCA_964035795.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:90.0%[S:88.7%,D:1.3%],F:2.0%,M:8.0%,n:954 | metazoa_odb10 | – |
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Rhabdastrella globostellata | GCA_964261875.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:66.0%[S:64.3%,D:1.7%],F:6.2%,M:27.8%,n:954 | metazoa_odb10 | – |
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Rhodactis osculifera | GCA_965240485.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:96.2%[S:95.3%,D:0.9%],F:1.4%,M:2.4%,n:954 | metazoa_odb10 | – |
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Rhopilema esculentum | GCA_964035655.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:92.8%[S:92.7%,D:0.1%],F:3.4%,M:3.8%,n:954 | metazoa_odb10 | – |
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Pillucina vietnamica | GCA_964017185.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:64.1%[S:62.3%,D:1.8%],F:6.4%,M:29.5%,n:5295 | mollusca_odb10 | – |
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Russula vesca | GCA_965121685.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:82.2%[S:81.4%,D:0.8%],F:7.1%,M:10.7%,n:2409 | basidiomycota_odb12 | – |
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Sclerolinum brattstromi | GCA_964656415.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:91.2%[S:90.0%,D:1.2%],F:4.6%,M:4.2%,n:954 | metazoa_odb10 | – |
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Sepia lycidas | GCA_963932145.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:84.2%[S:82.9%,D:1.3%],F:3.2%,M:12.6%,n:5295 | mollusca_odb10 | – |
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Sepiola atlantica | GCA_963556195.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:74.5%[S:73.1%,D:1.4%],F:4.2%,M:21.3%,n:5295 | mollusca_odb10 | – |
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Sepioteuthis lessoniana | GCA_963585895.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:78.0%[S:76.6%,D:1.4%],F:4.7%,M:17.3%,n:5295 | mollusca_odb10 | – |
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Siderastrea radians | GCA_964017195.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:94.9%[S:92.6%,D:2.3%],F:2.6%,M:2.5%,n:954 | metazoa_odb10 | – |
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Siderastrea siderea | GCA_964030785.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:96.4%[S:95.0%,D:1.4%],F:1.7%,M:1.9%,n:954 | metazoa_odb10 | – |
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Spheciospongia papillosa | GCA_965235015.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:83.2%[S:76.1%,D:7.1%],F:4.9%,M:11.9%,n:954 | metazoa_odb12 | – |
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Spheciospongia papillosa | GCA_965235065.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:83.0%[S:78.0%,D:5.0%],F:4.7%,M:12.3%,n:954 | metazoa_odb12 | – |
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Spongia lamella | GCA_963930835.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:43.7%[S:43.0%,D:0.7%],F:6.9%,M:49.4%,n:954 | metazoa_odb10 | – |
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Spongilla lacustris | GCA_949361645.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:67.0%[S:66.0%,D:1.0%],F:8.1%,M:24.9%,n:954 | metazoa_odb10 | – |
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Stelletta raphidiophora | GCA_965196945.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:83.9%[S:81.7%,D:2.2%],F:3.0%,M:13.1%,n:954 | metazoa_odb10 | – |
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Stephanocoenia intersepta | GCA_965112835.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:90.5%[S:88.8%,D:1.7%],F:5.1%,M:4.4%,n:954 | metazoa_odb10 | – |
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Stewartia floridana | GCA_964194395.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:77.4%[S:75.5%,D:1.9%],F:3.7%,M:18.9%,n:5295 | mollusca_odb10 | – |
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Suberites sp. UCMPWC859 | GCA_964274175.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:88.0%[S:86.6%,D:1.4%],F:3.5%,M:8.5%,n:954 | metazoa_odb10 | – |
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Tethya californiana | GCA_964205185.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:86.9%[S:85.1%,D:1.8%],F:4.3%,M:8.8%,n:954 | metazoa_odb10 | – |
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Thenea valdiviae | GCA_964340815.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:84.2%[S:81.8%,D:2.4%],F:6.0%,M:9.8%,n:954 | metazoa_odb10 | – |
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Theonella swinhoei | GCA_963970385.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:76.0%[S:73.9%,D:2.1%],F:6.3%,M:17.7%,n:954 | metazoa_odb10 | – |
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Tridacna crocea | GCA_943736015.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:90.8%[S:89.3%,D:1.5%],F:1.4%,M:7.8%,n:5295 | mollusca_odb10 | – |
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Tridacna derasa | GCA_963210305.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:85.7%[S:84.4%,D:1.3%],F:2.4%,M:11.9%,n:5295 | mollusca_odb10 | – |
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Tridacna gigas | GCA_945859785.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | beta.ensembl.org | C:89.0%[S:87.6%,D:1.4%],F:1.4%,M:9.6%,n:5295 | mollusca_odb10 | – |
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Turbinaria reniformis | GCA_964204835.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:89.6%[S:88.7%,D:0.9%],F:5.0%,M:5.4%,n:954 | metazoa_odb10 | – |
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Umbilicaria deusta | GCA_964340765.1 | Helixer | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | Coming soon! | C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:1706 | ascomycota_odb10 | – |
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Uroteuthis edulis | GCA_965641475.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:87.3%[S:86.0%,D:1.3%],F:6.5%,M:6.2%,n:4421 | mollusca_odb12 | – |
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Xanthoria parietina | GCA_964656405.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:87.5%[S:87.2%,D:0.2%],F:3.3%,M:9.2%,n:2826 | ascomycota_odb12 | – |
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Xestospongia bergquistia | GCA_963965975.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:86.4%[S:84.3%,D:2.1%],F:3.1%,M:10.5%,n:954 | metazoa_odb10 | – |
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Xestospongia muta | GCA_963693285.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | beta.ensembl.org | C:88.6%[S:84.9%,D:3.7%],F:4.3%,M:7.1%,n:954 | metazoa_odb10 | – |