Ancient Environmental Genomics Initiative for Sustainability (AEGIS)

Ancient Environmental Genomics Initiative for Sustainability (AEGIS) Logo

The Ancient Environmental Genomics Initiative for Sustainability (AEGIS) is a collaborative genomics initiative focused on generating and analysing genomic resources from ancient, environmental, and modern biodiversity samples to better understand ecosystem change and resilience through time.

The project combines large-scale sequencing, genome assembly, comparative genomics, and environmental DNA approaches to investigate biodiversity dynamics and support sustainability research.

More information: AEGIS

Ensembl is a partner in the AEGIS project, and we annotate the protein-coding and non-coding RNA gene structures using re-engineered versions of our Gene Annotation System (Aken et al, 2017) optimised for vertebrates and for non-vertebrates. After QC, genomes and annotations are made available via our FTP site (see table below) before subsequently being made available in the Ensembl Genome Browser. Access all project data via the AEGIS data portal.

Image Species Accession Annotation method Annotation Proteins Transcripts Softmasked genome Repeat library Other data View in browser BUSCO completeness BUSCO lineage Alternate haplotype
Achillea ptarmica Achillea ptarmica GCA_982375345.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.5%[S:87.7%,D:6.8%],F:3.0%,M:2.5%,n:2805 eudicotyledons_odb12 –
Aegilops tauschii Aegilops tauschii GCA_965151635.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:82.8%[S:80.5%,D:2.2%],F:6.3%,M:10.9%,n:6282 poales_odb12 –
Aegilops tauschii Aegilops tauschii GCA_965151605.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:88.7%[S:86.4%,D:2.4%],F:4.4%,M:6.8%,n:6282 poales_odb12 –
Agrostemma githago Agrostemma githago GCA_958450325.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.7%[S:24.9%,D:67.8%],F:1.6%,M:5.7%,n:2326 eudicots_odb10 –
Alnus cordata Alnus cordata GCA_965212435.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:89.2%[S:87.2%,D:2.0%],F:6.8%,M:4.0%,n:2805 eudicotyledons_odb12 –
Alnus glutinosa Alnus glutinosa GCA_958979055.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:91.5%[S:89.0%,D:2.5%],F:4.9%,M:3.6%,n:2326 eudicots_odb10 –
Alnus incana Alnus incana GCA_965122795.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:90.4%[S:88.5%,D:1.9%],F:6.8%,M:2.7%,n:2805 eudicotyledons_odb12 –
Anas acuta Anas acuta GCA_963932015.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.6%[S:95.1%,D:0.5%],F:0.9%,M:3.5%,n:8338 aves_odb10 –
Anser albifrons Anser albifrons GCA_976913865.1 Ensembl Genebuild GTF GFF3 FASTA – FTP dumps Coming soon! C:95.8%[S:95.4%,D:0.4%],F:1.3%,M:2.9%,n:6841 galloanserae_odb12 –
Anser anser Anser anser GCA_964211835.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.6%[S:94.9%,D:0.7%],F:1.2%,M:3.2%,n:8338 aves_odb10 beta.ensembl.org
Anser anser Anser anser GCA_964211785.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:91.3%[S:90.9%,D:0.4%],F:1.3%,M:7.4%,n:8338 aves_odb10 beta.ensembl.org
Aphis hederae Aphis hederae GCA_976991415.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:96.2%[S:95.6%,D:0.6%],F:1.6%,M:2.2%,n:3396 hemiptera_odb12 –
Aphrophora major Aphrophora major GCA_965285795.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:88.5%[S:87.2%,D:1.3%],F:7.6%,M:3.8%,n:3396 hemiptera_odb12 beta.ensembl.org
Aphrophora major Aphrophora major GCA_965285815.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:81.9%[S:80.8%,D:1.1%],F:6.6%,M:11.4%,n:3396 hemiptera_odb12 beta.ensembl.org
Aphrophora moscoviciae Aphrophora moscoviciae GCA_965612245.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:86.9%[S:85.8%,D:1.1%],F:8.8%,M:4.3%,n:3396 hemiptera_odb12 –
Arabidopsis thaliana Arabidopsis thaliana GCA_933208065.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.3%[S:90.7%,D:1.7%],F:1.4%,M:6.2%,n:4311 brassicales_odb12 –
Astragalus alpinus Astragalus alpinus GCA_964188245.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:87.4%[S:82.2%,D:5.2%],F:2.4%,M:10.2%,n:7843 fabales_odb12 beta.ensembl.org
Astragalus alpinus Astragalus alpinus GCA_964188115.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:85.5%[S:80.8%,D:4.7%],F:2.8%,M:11.7%,n:7843 fabales_odb12 beta.ensembl.org
Atropa belladonna Atropa belladonna GCA_978020845.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.6%[S:35.9%,D:59.8%],F:1.8%,M:2.6%,n:7934 solanales_odb12 –
Aythya fuligula Aythya fuligula GCA_976225485.1 Ensembl Genebuild GTF GFF3 FASTA – FTP dumps Coming soon! C:96.4%[S:96.0%,D:0.4%],F:1.2%,M:2.4%,n:6841 galloanserae_odb12 –
Aythya marila Aythya marila GCA_965140915.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.8%[S:95.4%,D:0.4%],F:1.3%,M:2.9%,n:6841 galloanserae_odb12 –
Barbarea vulgaris Barbarea vulgaris GCA_963667165.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.0%[S:90.1%,D:2.9%],F:1.7%,M:5.3%,n:4596 brassicales_odb10 –
Betula pendula Betula pendula GCA_965285875.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.0%[S:92.0%,D:2.0%],F:3.5%,M:2.6%,n:2805 eudicotyledons_odb12 –
Calluna vulgaris Calluna vulgaris GCA_964145215.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.1%[S:87.1%,D:5.0%],F:3.4%,M:4.5%,n:2326 eudicots_odb10 beta.ensembl.org
Calluna vulgaris Calluna vulgaris GCA_964145725.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.5%[S:88.9%,D:3.6%],F:4.4%,M:3.1%,n:2805 eudicotyledons_odb12 beta.ensembl.org
Cardamine flexuosa Cardamine flexuosa GCA_963555745.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.1%[S:90.9%,D:2.2%],F:1.2%,M:5.7%,n:4596 brassicales_odb10 –
Cardamine hirsuta Cardamine hirsuta GCA_964212585.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:91.5%[S:89.2%,D:2.3%],F:1.8%,M:6.7%,n:4596 brassicales_odb10 –
Carduus crispus Carduus crispus GCA_976988675.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.3%[S:88.6%,D:6.6%],F:2.5%,M:2.2%,n:2805 eudicotyledons_odb12 –
Carex caryophyllea Carex caryophyllea GCA_964339005.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.1%[S:88.0%,D:4.2%],F:3.4%,M:4.4%,n:6282 poales_odb12 –
Carex caryophyllea Carex caryophyllea GCA_964339005.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.2%[S:88.0%,D:4.2%],F:3.3%,M:4.4%,n:6282 poales_odb12 –
Carex echinata Carex echinata GCA_965279795.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:91.8%[S:88.6%,D:3.2%],F:3.5%,M:4.7%,n:6282 poales_odb12 –
Carex rostrata Carex rostrata GCA_964058835.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:91.2%[S:87.7%,D:3.5%],F:3.4%,M:5.4%,n:6282 poales_odb12 –
Chamaenerion angustifolium Chamaenerion angustifolium GCA_946814005.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA Repeatmodeler FTP dumps View C:91.0%[S:77.6%,D:13.4%],F:2.5%,M:6.5%,n:2326 eudicots_odb10 –
Chenopodium album Chenopodium album GCA_948465745.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA Repeatmodeler FTP dumps View C:96.4%[S:20.9%,D:75.5%],F:1.1%,M:2.5%,n:2326 eudicots_odb10 –
Chroicocephalus ridibundus Chroicocephalus ridibundus GCA_963924245.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.5%[S:95.2%,D:0.3%],F:1.5%,M:3.0%,n:8338 aves_odb10 –
Cirsium heterophyllum Cirsium heterophyllum GCA_965225835.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.4%[S:86.6%,D:6.8%],F:3.9%,M:2.7%,n:2805 eudicotyledons_odb12 –
Clangula hyemalis Clangula hyemalis GCA_963989345.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.8%[S:93.6%,D:0.2%],F:1.8%,M:4.5%,n:6841 galloanserae_odb12 –
Claytonia sibirica Claytonia sibirica GCA_977969855.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.0%[S:80.2%,D:11.8%],F:4.3%,M:3.7%,n:2805 eudicotyledons_odb12 –
Comarum palustre Comarum palustre GCA_951800085.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.7%[S:60.4%,D:35.3%],F:1.3%,M:3.0%,n:2326 eudicots_odb10 –
Convolvulus arvensis Convolvulus arvensis GCA_964199945.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:90.3%[S:19.1%,D:71.2%],F:1.0%,M:8.7%,n:5950 solanales_odb10 –
Cornus suecica Cornus suecica GCA_963922005.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:87.5%[S:84.7%,D:2.8%],F:8.3%,M:4.2%,n:2805 eudicotyledons_odb12 –
Dalbulus elimatus Dalbulus elimatus GCA_976225285.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.9%[S:91.2%,D:1.8%],F:4.8%,M:2.3%,n:3396 hemiptera_odb12 –
Dalbulus maidis Dalbulus maidis GCA_975739785.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.2%[S:91.3%,D:1.9%],F:4.2%,M:2.6%,n:3396 hemiptera_odb12 –
Descurainia sophia Descurainia sophia GCA_965275845.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:97.4%[S:17.0%,D:80.5%],F:0.7%,M:1.9%,n:4311 brassicales_odb12 –
Dryas octopetala Dryas octopetala GCA_963921425.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:87.0%[S:84.7%,D:2.2%],F:1.5%,M:11.5%,n:10071 rosaceae_odb12 –
Eleocharis quinqueflora Eleocharis quinqueflora GCA_964058905.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:86.8%[S:59.7%,D:27.1%],F:5.3%,M:8.0%,n:6282 poales_odb12 –
Empetrum nigrum Empetrum nigrum GCA_977035805.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:91.3%[S:87.5%,D:3.7%],F:4.2%,M:4.5%,n:2805 eudicotyledons_odb12 –
Eriophorum angustifolium Eriophorum angustifolium GCA_965282555.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.2%[S:89.1%,D:3.1%],F:3.0%,M:4.8%,n:6282 poales_odb12 –
Fallopia convolvulus Fallopia convolvulus GCA_964016875.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:96.0%[S:15.3%,D:80.6%],F:1.4%,M:2.6%,n:2805 eudicotyledons_odb12 –
Filipendula ulmaria Filipendula ulmaria GCA_964200655.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:97.4%[S:92.5%,D:4.9%],F:1.4%,M:1.2%,n:425 viridiplantae_odb10 –
Fragaria vesca Fragaria vesca GCA_964146915.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.6%[S:93.2%,D:2.4%],F:2.6%,M:1.8%,n:425 viridiplantae_odb10 –
Galatella linosyris Galatella linosyris GCA_965198375.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.4%[S:86.3%,D:7.1%],F:4.0%,M:2.6%,n:2805 eudicotyledons_odb12 –
Galeopsis tetrahit Galeopsis tetrahit GCA_963675135.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:96.2%[S:17.4%,D:78.8%],F:0.7%,M:3.1%,n:2326 eudicots_odb10 –
Galeopsis tetrahit Galeopsis tetrahit GCA_963675135.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.7%[S:16.9%,D:78.8%],F:1.2%,M:3.1%,n:2326 eudicots_odb10 –
Galium aparine Galium aparine GCA_964106835.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:99.5%[S:4.2%,D:95.3%],F:0.2%,M:0.3%,n:425 viridiplantae_odb10 –
Galium boreale Galium boreale GCA_977964095.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.8%[S:88.0%,D:4.7%],F:3.2%,M:4.1%,n:2805 eudicotyledons_odb12 –
Galium uliginosum Galium uliginosum GCA_965199535.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.8%[S:90.3%,D:3.5%],F:2.6%,M:3.6%,n:2805 eudicotyledons_odb12 –
Geranium molle Geranium molle GCA_965199465.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.6%[S:79.3%,D:14.3%],F:2.3%,M:4.1%,n:2805 eudicotyledons_odb12 –
Geum rivale Geum rivale GCA_964205265.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.9%[S:23.0%,D:69.9%],F:0.5%,M:6.6%,n:10071 rosaceae_odb12 –
Gnaphalium uliginosum Gnaphalium uliginosum GCA_963930675.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.3%[S:91.0%,D:3.3%],F:2.0%,M:3.7%,n:2326 eudicots_odb10 –
Gobius niger Gobius niger GCA_951799975.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:87.4%[S:86.3%,D:1.1%],F:3.0%,M:9.6%,n:3640 actinopterygii_odb10 –
Hedera helix Hedera helix GCA_947179155.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA Repeatmodeler FTP dumps View C:94.3%[S:63.5%,D:30.8%],F:2.7%,M:3.0%,n:2326 eudicots_odb10 –
Heracleum sphondylium Heracleum sphondylium GCA_965233475.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.8%[S:83.3%,D:10.5%],F:3.4%,M:2.8%,n:2805 eudicotyledons_odb12 –
Hierochloe odorata Hierochloe odorata GCA_965212095.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:88.5%[S:33.9%,D:54.6%],F:4.1%,M:7.4%,n:6282 poales_odb12 –
Honckenya peploides Honckenya peploides GCA_965231345.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.3%[S:48.1%,D:45.3%],F:2.9%,M:3.8%,n:2805 eudicotyledons_odb12 –
Hydrocotyle vulgaris Hydrocotyle vulgaris GCA_964106935.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:98.5%[S:44.4%,D:54.1%],F:1.3%,M:0.1%,n:822 viridiplantae_odb12 –
Hypericum perforatum Hypericum perforatum GCA_965644135.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:86.6%[S:79.6%,D:7.0%],F:6.4%,M:7.0%,n:2805 eudicotyledons_odb12 –
Jacobaea vulgaris Jacobaea vulgaris GCA_965178225.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.9%[S:72.4%,D:20.4%],F:3.9%,M:3.3%,n:2805 eudicotyledons_odb12 –
Juncus squarrosus Juncus squarrosus GCA_965214595.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:86.0%[S:83.5%,D:2.5%],F:3.8%,M:10.2%,n:6282 poales_odb12 –
Lamium amplexicaule Lamium amplexicaule GCA_964059565.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.5%[S:90.1%,D:3.5%],F:3.6%,M:2.9%,n:2805 eudicotyledons_odb12 –
Lamium purpureum Lamium purpureum GCA_964659665.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.3%[S:91.2%,D:4.1%],F:2.5%,M:2.2%,n:2805 eudicotyledons_odb12 –
Lamium purpureum Lamium purpureum GCA_964659665.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.5%[S:89.6%,D:4.9%],F:2.4%,M:3.2%,n:2874 lamiales_odb12 –
Lapsana communis Lapsana communis GCA_965198615.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.4%[S:91.0%,D:4.4%],F:2.7%,M:1.9%,n:2805 eudicotyledons_odb12 –
Larus argentatus Larus argentatus GCA_964417175.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.6%[S:95.2%,D:0.4%],F:1.5%,M:2.9%,n:6251 aves_odb12 –
Larus argentatus Larus argentatus GCA_964417125.1 Ensembl Genebuild GTF GFF3 FASTA – FTP dumps Coming soon! C:93.5%[S:93.2%,D:0.2%],F:1.4%,M:5.2%,n:6251 aves_odb12 beta.ensembl.org
Larus fuscus Larus fuscus GCA_963932225.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.8%[S:95.5%,D:0.3%],F:1.1%,M:3.1%,n:8338 aves_odb10 –
Larus fuscus Larus fuscus GCA_963932325.2 Ensembl Genebuild GTF GFF3 FASTA – FTP dumps Coming soon! C:96.3%[S:96.0%,D:0.2%],F:1.3%,M:2.4%,n:6251 aves_odb12 –
Linaria repens Linaria repens GCA_977927345.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.2%[S:90.3%,D:4.9%],F:2.3%,M:2.4%,n:2874 lamiales_odb12 –
Linaria vulgaris Linaria vulgaris GCA_948329865.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA Repeatmodeler FTP dumps View C:94.1%[S:89.6%,D:4.5%],F:1.9%,M:4.0%,n:2326 eudicots_odb10 –
Macrosiphum cholodkovskyi Macrosiphum cholodkovskyi GCA_978019455.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:96.9%[S:95.6%,D:1.3%],F:1.6%,M:1.5%,n:3396 hemiptera_odb12 –
Macrosteles quadrilineatus Macrosteles quadrilineatus GCA_976628355.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.6%[S:93.3%,D:1.4%],F:3.5%,M:1.9%,n:3396 hemiptera_odb12 –
Matricaria chamomilla Matricaria chamomilla GCA_964234995.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.8%[S:88.9%,D:4.9%],F:2.1%,M:4.1%,n:2326 eudicots_odb10 –
Medicago lupulina Medicago lupulina GCA_958299785.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.3%[S:91.5%,D:2.8%],F:1.3%,M:4.4%,n:5366 fabales_odb10 –
Melampyrum sylvaticum Melampyrum sylvaticum GCA_965112295.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.8%[S:76.2%,D:16.7%],F:4.6%,M:2.6%,n:822 viridiplantae_odb12 –
Melampyrum sylvaticum Melampyrum sylvaticum GCA_965112295.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.1%[S:74.6%,D:17.4%],F:3.4%,M:4.5%,n:2874 lamiales_odb12 –
Mustelus asterias Mustelus asterias GCA_964213995.1 Ensembl Genebuild GTF GFF3 FASTA – FTP dumps Coming soon! C:96.1%[S:95.2%,D:0.9%],F:2.7%,M:1.2%,n:672 metazoa_odb12 –
Myriophyllum sibiricum Myriophyllum sibiricum GCA_977013075.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.7%[S:90.9%,D:1.8%],F:3.0%,M:4.3%,n:2805 eudicotyledons_odb12 –
Myrrhis odorata Myrrhis odorata GCA_977930265.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.4%[S:85.3%,D:8.1%],F:3.1%,M:3.5%,n:2805 eudicotyledons_odb12 –
Myzus lythri Myzus lythri GCA_982296965.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:96.9%[S:95.6%,D:1.4%],F:1.6%,M:1.5%,n:3396 hemiptera_odb12 –
Nasturtium officinale Nasturtium officinale GCA_963854855.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.2%[S:52.9%,D:41.3%],F:0.8%,M:5.0%,n:4596 brassicales_odb10 –
Oxyria digyna Oxyria digyna GCA_964035995.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.4%[S:88.5%,D:4.9%],F:3.3%,M:3.3%,n:425 viridiplantae_odb10 –
Peregrinus maidis Peregrinus maidis GCA_976984555.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:88.4%[S:86.9%,D:1.5%],F:4.9%,M:6.7%,n:3396 hemiptera_odb12 beta.ensembl.org
Peregrinus maidis Peregrinus maidis GCA_976984645.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:71.7%[S:70.2%,D:1.6%],F:5.4%,M:22.9%,n:3396 hemiptera_odb12 beta.ensembl.org
Persicaria maculosa Persicaria maculosa GCA_963922045.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:86.9%[S:16.2%,D:70.7%],F:2.3%,M:10.8%,n:2326 eudicots_odb10 –
Petasites hybridus Petasites hybridus GCA_965123105.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:98.4%[S:47.1%,D:51.3%],F:1.2%,M:0.4%,n:822 viridiplantae_odb12 –
Pohlia cruda Pohlia cruda GCA_982319405.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:76.9%[S:68.8%,D:8.1%],F:7.8%,M:15.3%,n:2026 embryophyta_odb12 –
Polygonum aviculare Polygonum aviculare GCA_934048045.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA Repeatmodeler FTP dumps View C:90.7%[S:85.2%,D:5.5%],F:1.9%,M:7.4%,n:2326 eudicots_odb10 –
Populus tremula Populus tremula GCA_964106015.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.9%[S:78.9%,D:16.0%],F:1.6%,M:3.5%,n:2326 eudicots_odb10 –
Potamogeton natans Potamogeton natans GCA_965203715.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.7%[S:28.6%,D:64.1%],F:3.4%,M:3.9%,n:2821 liliopsida_odb12 –
Potamogeton perfoliatus Potamogeton perfoliatus GCA_977036025.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.6%[S:39.7%,D:52.9%],F:3.5%,M:3.9%,n:2821 liliopsida_odb12 –
Primula veris Primula veris GCA_963682055.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:91.7%[S:88.4%,D:3.3%],F:3.2%,M:5.1%,n:2326 eudicots_odb10 –
Prunella vulgaris Prunella vulgaris GCA_965154465.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.4%[S:71.8%,D:23.5%],F:2.1%,M:2.5%,n:2805 eudicotyledons_odb12 beta.ensembl.org
Prunella vulgaris Prunella vulgaris GCA_965154595.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.3%[S:72.1%,D:23.2%],F:2.1%,M:2.6%,n:2805 eudicotyledons_odb12 beta.ensembl.org
Prunella vulgaris Prunella vulgaris GCA_965154595.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.1%[S:67.5%,D:27.6%],F:2.1%,M:2.8%,n:2874 lamiales_odb12 –
Prunus avium Prunus avium GCA_965620075.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.7%[S:91.5%,D:1.2%],F:1.8%,M:5.5%,n:10071 rosaceae_odb12 –
Prunus padus Prunus padus GCA_964059315.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.8%[S:31.0%,D:64.8%],F:1.0%,M:3.2%,n:10071 rosaceae_odb12 –
Quercus cerris Quercus cerris GCA_963669245.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.3%[S:90.2%,D:4.1%],F:3.1%,M:2.6%,n:2326 eudicots_odb10 –
Quercus robur Quercus robur GCA_932294415.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA Repeatmodeler FTP dumps View C:94.4%[S:90.5%,D:3.9%],F:2.9%,M:2.7%,n:2326 eudicots_odb10 –
Rosa rugosa Rosa rugosa GCA_958449725.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.0%[S:89.8%,D:4.2%],F:2.8%,M:3.2%,n:2326 eudicots_odb10 –
Rosa spinosissima Rosa spinosissima GCA_965112335.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:97.5%[S:17.9%,D:79.6%],F:1.4%,M:1.0%,n:2805 eudicotyledons_odb12 –
Rubus idaeus Rubus idaeus GCA_965153425.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.3%[S:92.0%,D:2.3%],F:2.4%,M:3.4%,n:2805 eudicotyledons_odb12 –
Rumex acetosa Rumex acetosa GCA_977966345.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:91.0%[S:80.2%,D:10.8%],F:3.6%,M:5.4%,n:2805 eudicotyledons_odb12 –
Salix caprea Salix caprea GCA_964035475.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:89.3%[S:61.2%,D:28.1%],F:1.6%,M:9.2%,n:6134 malpighiales_odb12 –
Salix cinerea Salix cinerea GCA_965260955.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:88.9%[S:59.0%,D:29.9%],F:1.5%,M:9.5%,n:6134 malpighiales_odb12 –
Salix pentandra Salix pentandra GCA_979017335.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.8%[S:18.4%,D:74.4%],F:0.6%,M:6.5%,n:6134 malpighiales_odb12 –
Salix repens Salix repens GCA_965260945.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:88.8%[S:60.2%,D:28.6%],F:1.6%,M:9.6%,n:6134 malpighiales_odb12 beta.ensembl.org
Salix repens Salix repens GCA_965260975.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:89.2%[S:60.7%,D:28.5%],F:1.5%,M:9.3%,n:6134 malpighiales_odb12 beta.ensembl.org
Saxifraga aizoides Saxifraga aizoides GCA_965199075.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.7%[S:73.3%,D:19.4%],F:4.0%,M:3.4%,n:2805 eudicotyledons_odb12 –
Senecio sylvaticus Senecio sylvaticus GCA_965199645.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:97.7%[S:22.4%,D:75.3%],F:1.4%,M:1.0%,n:2805 eudicotyledons_odb12 beta.ensembl.org
Senecio sylvaticus Senecio sylvaticus GCA_965199475.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:97.6%[S:22.6%,D:75.0%],F:1.3%,M:1.1%,n:2805 eudicotyledons_odb12 beta.ensembl.org
Sherardia arvensis Sherardia arvensis GCA_948330725.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA Repeatmodeler FTP dumps View C:91.6%[S:87.6%,D:4.0%],F:2.0%,M:6.4%,n:2326 eudicots_odb10 –
Silene acaulis Silene acaulis GCA_981406025.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.2%[S:86.8%,D:6.4%],F:2.8%,M:4.0%,n:2805 eudicotyledons_odb12 –
Solanum nigrum Solanum nigrum GCA_964243065.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:97.2%[S:11.1%,D:86.1%],F:1.0%,M:1.8%,n:5950 solanales_odb10 –
Sphagnum teres Sphagnum teres GCA_965649795.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:80.8%[S:69.1%,D:11.7%],F:6.9%,M:12.3%,n:2026 embryophyta_odb12 –
Tanacetum vulgare Tanacetum vulgare GCA_964264315.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.0%[S:87.0%,D:7.0%],F:1.9%,M:4.1%,n:2326 eudicots_odb10 –
Thalictrum alpinum Thalictrum alpinum GCA_979016915.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.2%[S:89.9%,D:4.2%],F:3.8%,M:2.0%,n:2026 embryophyta_odb12 –
Torilis japonica Torilis japonica GCA_965197025.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.6%[S:84.2%,D:9.3%],F:3.1%,M:3.3%,n:2805 eudicotyledons_odb12 –
Torilis japonica Torilis japonica GCA_965197025.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.7%[S:84.3%,D:9.4%],F:3.1%,M:3.2%,n:2805 eudicotyledons_odb12 –
Tragopogon pratensis Tragopogon pratensis GCA_964059535.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:94.0%[S:87.8%,D:6.2%],F:1.8%,M:4.2%,n:2326 eudicots_odb10 –
Trifolium repens Trifolium repens GCA_977963945.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:93.3%[S:18.7%,D:74.6%],F:1.8%,M:4.9%,n:7843 fabales_odb12 –
Triglochin maritima Triglochin maritima GCA_963682175.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:84.9%[S:35.1%,D:49.8%],F:10.1%,M:5.0%,n:3236 liliopsida_odb10 –
Triglochin palustris Triglochin palustris GCA_964197745.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:90.1%[S:85.0%,D:5.1%],F:5.1%,M:4.8%,n:2821 liliopsida_odb12 –
Tussilago farfara Tussilago farfara GCA_964605395.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.8%[S:59.9%,D:35.9%],F:2.5%,M:1.7%,n:2805 eudicotyledons_odb12 –
Ulmus glabra Ulmus glabra GCA_964106905.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:89.5%[S:86.5%,D:3.0%],F:2.2%,M:8.3%,n:9329 rosales_odb12 –
Ulmus minor Ulmus minor GCA_965198805.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:90.0%[S:86.8%,D:3.2%],F:2.2%,M:7.8%,n:9329 rosales_odb12 –
Urtica dioica Urtica dioica GCA_964188135.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:89.2%[S:77.2%,D:12.0%],F:2.5%,M:8.3%,n:2326 eudicots_odb10 –
Urtica urens Urtica urens GCA_958296335.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:88.7%[S:86.3%,D:2.4%],F:2.0%,M:9.3%,n:2326 eudicots_odb10 –
Vaccinium vitis-idaea Vaccinium vitis-idaea GCA_963854785.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.3%[S:86.8%,D:5.5%],F:3.4%,M:4.3%,n:2326 eudicots_odb10 –
Vaccinium vitis-idaea Vaccinium vitis-idaea GCA_963854785.2 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.9%[S:88.8%,D:4.1%],F:4.0%,M:3.0%,n:2805 eudicotyledons_odb12 –
Veronica anagallis-aquatica Veronica anagallis-aquatica GCA_965198525.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:95.2%[S:16.7%,D:78.5%],F:1.8%,M:3.0%,n:2874 lamiales_odb12 –
Veronica arvensis Veronica arvensis GCA_964211895.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:89.3%[S:85.1%,D:4.2%],F:5.0%,M:5.7%,n:2805 eudicotyledons_odb12 –
Veronica scutellata Veronica scutellata GCA_965198585.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:88.4%[S:81.4%,D:7.1%],F:5.4%,M:6.2%,n:2874 lamiales_odb12 –
Veronica serpyllifolia Veronica serpyllifolia GCA_964197965.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:92.6%[S:88.0%,D:4.6%],F:1.9%,M:5.5%,n:2326 eudicots_odb10 –
Vicia sativa Vicia sativa GCA_964197575.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:90.8%[S:87.5%,D:3.3%],F:6.1%,M:3.1%,n:425 viridiplantae_odb10 –
Viola tricolor Viola tricolor GCA_965217375.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:98.6%[S:8.9%,D:89.7%],F:0.5%,M:0.8%,n:2805 eudicotyledons_odb12 beta.ensembl.org
Viola tricolor Viola tricolor GCA_965217365.1 Ensembl Genebuild GTF GFF3 FASTA FASTA FASTA – FTP dumps View C:98.6%[S:9.9%,D:88.6%],F:0.5%,M:0.9%,n:2805 eudicotyledons_odb12 beta.ensembl.org