Aquatic Symbiosis Genomics (ASG) Project
Aquatic Symbiosis Genomics Project is a global collaboration to generate high quality genome sequences for a wide range of eukaryotes and their microbial symbionts. Launched under the Symbiosis in Aquatic Systems Initiative of the Gordon and Betty Moore Foundation, the ASG Project brings together researchers from across the globe who hope to use these reference genomes to augment and extend their analyses of the dynamics, mechanisms and environmental importance of symbiosis. Applying large-scale, high-throughput sequencing and assembly technologies, the ASG collaboration aims tol assemble and annotate the genomes of 500 symbiotic organisms – both the “hosts” and the microbial symbionts with which they associate. These data will be released openly to benefit all who work on symbiosis, from conservation geneticists to those interested in the origin of the eukaryotic cell.
At Ensembl, we annotate the protein-coding and non-coding RNA gene structures using re-engineered versions of our Gene Annotation System (Aken et al, 2017) optimised for vertebrates and for non-vertebrates. When a species lacks transcriptomic data, we run BRAKER2 to generate hint-guided ab initio gene predictions of protein-coding genes, in the default protein mode (see the blog post for more information). After QC, genomes and annotations are made available via our FTP site (see table below) before subsequently being made available in the Ensembl Genome Browser.
| Image | Species | Accession | Annotation method | Annotation | Proteins | Transcripts | Softmasked genome | Repeat library | Other data | View in browser | BUSCO completeness | Alternate haplotype |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Acropora spathulata | GCA_964019555.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Agelas oroides | GCA_949130485.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | – | – |
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Amphiduros pacificus | GCA_949316495.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | – | – |
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Anthopleura xanthogrammica | GCA_964019055.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Aplysina aerophoba | GCA_949841015.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Aurelia sp. 4 Dawson et al 2005 | GCA_964019985.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Bathymodiolus brooksi | GCA_963680875.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Bathymodiolus septemdierum | GCA_963383655.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Blastomussa wellsi | GCA_947652115.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | – | – |
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Catostylus mosaicus | GCA_964019065.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Chondrilla caribensis | GCA_964020155.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Chondrosia reniformis | GCA_947172415.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | – | – |
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Cliona orientalis | GCA_963930775.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Corticium candelabrum | GCA_963422355.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Crambe crambe | GCA_963924555.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Diacarnus erythraeanus | GCA_964016965.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Dysidea avara | GCA_963678975.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Elysia crispata | GCA_963854125.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Eunapius fragilis | GCA_963681505.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Fragum fragum | GCA_946902895.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | BUSCO | – |
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Fragum sueziense | GCA_963680895.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Galaxea fascicularis | GCA_948470475.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | – | – |
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Halichondria panicea | GCA_963675165.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Halisarca caerulea | GCA_963170055.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Ianthella basta | GCA_964019415.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Lamellibrachia columna | GCA_963662155.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Lycopodina hypogea | GCA_963969325.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Magelona johnstoni | GCA_963942565.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Mastigias papua | GCA_964019165.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Meandrina meandrites | GCA_963693305.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Micromussa lordhowensis | GCA_964020085.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Montipora capitata | GCA_949126865.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | – | rapid.ensembl.org |
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Muricea muricata | GCA_963855995.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Oasisia sp. SBJ-2009 | GCA_964017155.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Oscarella lobularis | GCA_947507565.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | – | – |
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Osedax fenrisi | GCA_964019155.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Pelagia noctiluca | GCA_963924455.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Plumapathes pennacea | GCA_964036295.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Porites lutea | GCA_958299795.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | rapid.ensembl.org |
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Protula sp. h YS-2021 | GCA_949752745.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Pillucina vietnamica | GCA_964017185.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Sepiola atlantica | GCA_963556195.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Sepioteuthis lessoniana | GCA_963585895.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Siderastrea radians | GCA_964017195.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Spongilla lacustris | GCA_949361645.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | – | – |
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Theonella swinhoei | GCA_963970385.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Tridacna crocea | GCA_943736015.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | BUSCO | – |
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Tridacna derasa | GCA_963210305.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Tridacna gigas | GCA_945859785.2 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | rapid.ensembl.org | BUSCO | – |
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Xestospongia bergquistia | GCA_963965975.1 | Ensembl Genebuild | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |
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Xestospongia muta | GCA_963693285.1 | BRAKER2 | GTF, GFF3 | FASTA | FASTA | FASTA | – | FTP dumps | rapid.ensembl.org | – | – |