Ancient Environmental Genomics Initiative for Sustainability (AEGIS)
The Ancient Environmental Genomics Initiative for Sustainability (AEGIS) is a collaborative genomics initiative focused on generating and analysing genomic resources from ancient, environmental, and modern biodiversity samples to better understand ecosystem change and resilience through time.
The project combines large-scale sequencing, genome assembly, comparative genomics, and environmental DNA approaches to investigate biodiversity dynamics and support sustainability research.
More information: AEGIS
Ensembl is a partner in the AEGIS project, and we annotate the protein-coding and non-coding RNA gene structures using re-engineered versions of our Gene Annotation System (Aken et al, 2017) optimised for vertebrates and for non-vertebrates. After QC, genomes and annotations are made available via our FTP site (see table below) before subsequently being made available in the Ensembl Genome Browser. Access all project data via the AEGIS data portal.
| Image | Species | Accession | Annotation method | Annotation | Proteins | Transcripts | Softmasked genome | Repeat library | Other data | View in browser | BUSCO completeness | BUSCO lineage | Alternate haplotype |
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Achillea ptarmica | GCA_982375345.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:94.5%[S:87.7%,D:6.8%],F:3.0%,M:2.5%,n:2805 | eudicotyledons_odb12 | ||||
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Aegilops tauschii | GCA_965151635.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:82.8%[S:80.5%,D:2.2%],F:6.3%,M:10.9%,n:6282 | poales_odb12 | ||
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Aegilops tauschii | GCA_965151605.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:88.7%[S:86.4%,D:2.4%],F:4.4%,M:6.8%,n:6282 | poales_odb12 | ||
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Agrostemma githago | GCA_958450325.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.7%[S:24.9%,D:67.8%],F:1.6%,M:5.7%,n:2326 | eudicots_odb10 | ||
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Alnus cordata | GCA_965212435.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:89.2%[S:87.2%,D:2.0%],F:6.8%,M:4.0%,n:2805 | eudicotyledons_odb12 | ||
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Alnus glutinosa | GCA_958979055.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:91.5%[S:89.0%,D:2.5%],F:4.9%,M:3.6%,n:2326 | eudicots_odb10 | ||
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Alnus incana | GCA_965122795.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:90.4%[S:88.5%,D:1.9%],F:6.8%,M:2.7%,n:2805 | eudicotyledons_odb12 | ||
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Anas acuta | GCA_963932015.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.6%[S:95.1%,D:0.5%],F:0.9%,M:3.5%,n:8338 | aves_odb10 | ||
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Anser anser | GCA_964211835.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.6%[S:94.9%,D:0.7%],F:1.2%,M:3.2%,n:8338 | aves_odb10 | ||
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Anser anser | GCA_964211785.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:91.3%[S:90.9%,D:0.4%],F:1.3%,M:7.4%,n:8338 | aves_odb10 | ||
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Aphis hederae | GCA_976991415.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:96.2%[S:95.6%,D:0.6%],F:1.6%,M:2.2%,n:3396 | hemiptera_odb12 | ||||
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Aphrophora major | GCA_965285795.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:88.5%[S:87.2%,D:1.3%],F:7.6%,M:3.8%,n:3396 | hemiptera_odb12 | ||
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Aphrophora major | GCA_965285815.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:81.9%[S:80.8%,D:1.1%],F:6.6%,M:11.4%,n:3396 | hemiptera_odb12 | ||
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Aphrophora moscoviciae | GCA_965612245.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:86.9%[S:85.8%,D:1.1%],F:8.8%,M:4.3%,n:3396 | hemiptera_odb12 | ||
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Arabidopsis thaliana | GCA_933208065.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:92.3%[S:90.7%,D:1.7%],F:1.4%,M:6.2%,n:4311 | brassicales_odb12 | ||||
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Astragalus alpinus | GCA_964188245.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:87.4%[S:82.2%,D:5.2%],F:2.4%,M:10.2%,n:7843 | fabales_odb12 | ||
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Astragalus alpinus | GCA_964188115.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:85.5%[S:80.8%,D:4.7%],F:2.8%,M:11.7%,n:7843 | fabales_odb12 | ||||
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Atropa belladonna | GCA_978020845.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:95.6%[S:35.9%,D:59.8%],F:1.8%,M:2.6%,n:7934 | solanales_odb12 | ||||
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Aythya marila | GCA_965140915.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.8%[S:95.4%,D:0.4%],F:1.3%,M:2.9%,n:6841 | galloanserae_odb12 | ||
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Barbarea vulgaris | GCA_963667165.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.0%[S:90.1%,D:2.9%],F:1.7%,M:5.3%,n:4596 | brassicales_odb10 | ||
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Betula pendula | GCA_965285875.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.0%[S:92.0%,D:2.0%],F:3.5%,M:2.6%,n:2805 | eudicotyledons_odb12 | ||
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Calluna vulgaris | GCA_964145215.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.1%[S:87.1%,D:5.0%],F:3.4%,M:4.5%,n:2326 | eudicots_odb10 | ||
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Calluna vulgaris | GCA_964145725.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.5%[S:88.9%,D:3.6%],F:4.4%,M:3.1%,n:2805 | eudicotyledons_odb12 | ||
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Cardamine flexuosa | GCA_963555745.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.1%[S:90.9%,D:2.2%],F:1.2%,M:5.7%,n:4596 | brassicales_odb10 | ||
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Cardamine hirsuta | GCA_964212585.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:91.5%[S:89.2%,D:2.3%],F:1.8%,M:6.7%,n:4596 | brassicales_odb10 | ||
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Carduus crispus | GCA_976988675.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.3%[S:88.6%,D:6.6%],F:2.5%,M:2.2%,n:2805 | eudicotyledons_odb12 | ||
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Carex caryophyllea | GCA_964339005.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.1%[S:88.0%,D:4.2%],F:3.4%,M:4.4%,n:6282 | poales_odb12 | ||
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Carex caryophyllea | GCA_964339005.2 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.2%[S:88.0%,D:4.2%],F:3.3%,M:4.4%,n:6282 | poales_odb12 | ||
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Carex echinata | GCA_965279795.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:91.8%[S:88.6%,D:3.2%],F:3.5%,M:4.7%,n:6282 | poales_odb12 | ||
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Carex rostrata | GCA_964058835.2 | Ensembl Genebuild | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:91.2%[S:87.7%,D:3.5%],F:3.4%,M:5.4%,n:6282 | poales_odb12 | ||||
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Chamaenerion angustifolium | GCA_946814005.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FASTA | FTP dumps | View | C:91.0%[S:77.6%,D:13.4%],F:2.5%,M:6.5%,n:2326 | eudicots_odb10 | |
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Chenopodium album | GCA_948465745.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FASTA | FTP dumps | View | C:96.4%[S:20.9%,D:75.5%],F:1.1%,M:2.5%,n:2326 | eudicots_odb10 | |
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Chroicocephalus ridibundus | GCA_963924245.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.5%[S:95.2%,D:0.3%],F:1.5%,M:3.0%,n:8338 | aves_odb10 | ||
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Cirsium heterophyllum | GCA_965225835.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.4%[S:86.6%,D:6.8%],F:3.9%,M:2.7%,n:2805 | eudicotyledons_odb12 | ||
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Clangula hyemalis | GCA_963989345.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.8%[S:93.6%,D:0.2%],F:1.8%,M:4.5%,n:6841 | galloanserae_odb12 | ||
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Claytonia sibirica | GCA_977969855.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:92.0%[S:80.2%,D:11.8%],F:4.3%,M:3.7%,n:2805 | eudicotyledons_odb12 | ||||
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Comarum palustre | GCA_951800085.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.7%[S:60.4%,D:35.3%],F:1.3%,M:3.0%,n:2326 | eudicots_odb10 | ||
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Convolvulus arvensis | GCA_964199945.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:90.3%[S:19.1%,D:71.2%],F:1.0%,M:8.7%,n:5950 | solanales_odb10 | ||
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Cornus suecica | GCA_963922005.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:87.5%[S:84.7%,D:2.8%],F:8.3%,M:4.2%,n:2805 | eudicotyledons_odb12 | ||||
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Dalbulus elimatus | GCA_976225285.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.9%[S:91.2%,D:1.8%],F:4.8%,M:2.3%,n:3396 | hemiptera_odb12 | ||
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Dalbulus maidis | GCA_975739785.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.2%[S:91.3%,D:1.9%],F:4.2%,M:2.6%,n:3396 | hemiptera_odb12 | ||
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Descurainia sophia | GCA_965275845.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:97.4%[S:17.0%,D:80.5%],F:0.7%,M:1.9%,n:4311 | brassicales_odb12 | ||
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Eleocharis quinqueflora | GCA_964058905.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:86.8%[S:59.7%,D:27.1%],F:5.3%,M:8.0%,n:6282 | poales_odb12 | ||
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Empetrum nigrum | GCA_977035805.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:91.3%[S:87.5%,D:3.7%],F:4.2%,M:4.5%,n:2805 | eudicotyledons_odb12 | ||
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Eriophorum angustifolium | GCA_965282555.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.2%[S:89.1%,D:3.1%],F:3.0%,M:4.8%,n:6282 | poales_odb12 | ||
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Fallopia convolvulus | GCA_964016875.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:96.0%[S:15.3%,D:80.6%],F:1.4%,M:2.6%,n:2805 | eudicotyledons_odb12 | ||||
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Filipendula ulmaria | GCA_964200655.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:97.4%[S:92.5%,D:4.9%],F:1.4%,M:1.2%,n:425 | viridiplantae_odb10 | ||
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Fragaria vesca | GCA_964146915.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.6%[S:93.2%,D:2.4%],F:2.6%,M:1.8%,n:425 | viridiplantae_odb10 | ||
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Galatella linosyris | GCA_965198375.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:93.4%[S:86.3%,D:7.1%],F:4.0%,M:2.6%,n:2805 | eudicotyledons_odb12 | ||||
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Galeopsis tetrahit | GCA_963675135.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:96.2%[S:17.4%,D:78.8%],F:0.7%,M:3.1%,n:2326 | eudicots_odb10 | ||
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Galeopsis tetrahit | GCA_963675135.2 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.7%[S:16.9%,D:78.8%],F:1.2%,M:3.1%,n:2326 | eudicots_odb10 | ||
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Galium aparine | GCA_964106835.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:99.5%[S:4.2%,D:95.3%],F:0.2%,M:0.3%,n:425 | viridiplantae_odb10 | ||
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Galium boreale | GCA_977964095.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:92.8%[S:88.0%,D:4.7%],F:3.2%,M:4.1%,n:2805 | eudicotyledons_odb12 | ||||
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Galium uliginosum | GCA_965199535.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.8%[S:90.3%,D:3.5%],F:2.6%,M:3.6%,n:2805 | eudicotyledons_odb12 | ||
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Geranium molle | GCA_965199465.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.6%[S:79.3%,D:14.3%],F:2.3%,M:4.1%,n:2805 | eudicotyledons_odb12 | ||
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Geum rivale | GCA_964205265.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:92.9%[S:23.0%,D:69.9%],F:0.5%,M:6.6%,n:10071 | rosaceae_odb12 | ||||
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Gnaphalium uliginosum | GCA_963930675.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.3%[S:91.0%,D:3.3%],F:2.0%,M:3.7%,n:2326 | eudicots_odb10 | ||
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Gobius niger | GCA_951799975.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:87.4%[S:86.3%,D:1.1%],F:3.0%,M:9.6%,n:3640 | actinopterygii_odb10 | ||
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Hedera helix | GCA_947179155.2 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FASTA | FTP dumps | View | C:94.3%[S:63.5%,D:30.8%],F:2.7%,M:3.0%,n:2326 | eudicots_odb10 | |
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Heracleum sphondylium | GCA_965233475.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.8%[S:83.3%,D:10.5%],F:3.4%,M:2.8%,n:2805 | eudicotyledons_odb12 | ||
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Hierochloe odorata | GCA_965212095.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:88.5%[S:33.9%,D:54.6%],F:4.1%,M:7.4%,n:6282 | poales_odb12 | ||
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Honckenya peploides | GCA_965231345.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.3%[S:48.1%,D:45.3%],F:2.9%,M:3.8%,n:2805 | eudicotyledons_odb12 | ||
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Hydrocotyle vulgaris | GCA_964106935.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:98.5%[S:44.4%,D:54.1%],F:1.3%,M:0.1%,n:822 | viridiplantae_odb12 | ||
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Hypericum perforatum | GCA_965644135.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:86.6%[S:79.6%,D:7.0%],F:6.4%,M:7.0%,n:2805 | eudicotyledons_odb12 | ||
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Jacobaea vulgaris | GCA_965178225.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.9%[S:72.4%,D:20.4%],F:3.9%,M:3.3%,n:2805 | eudicotyledons_odb12 | ||
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Juncus squarrosus | GCA_965214595.2 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:86.0%[S:83.5%,D:2.5%],F:3.8%,M:10.2%,n:6282 | poales_odb12 | ||
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Lamium amplexicaule | GCA_964059565.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.5%[S:90.1%,D:3.5%],F:3.6%,M:2.9%,n:2805 | eudicotyledons_odb12 | ||
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Lamium purpureum | GCA_964659665.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.3%[S:91.2%,D:4.1%],F:2.5%,M:2.2%,n:2805 | eudicotyledons_odb12 | ||
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Lamium purpureum | GCA_964659665.2 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.5%[S:89.6%,D:4.9%],F:2.4%,M:3.2%,n:2874 | lamiales_odb12 | ||
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Lapsana communis | GCA_965198615.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.4%[S:91.0%,D:4.4%],F:2.7%,M:1.9%,n:2805 | eudicotyledons_odb12 | ||
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Larus argentatus | GCA_964417175.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.6%[S:95.2%,D:0.4%],F:1.5%,M:2.9%,n:6251 | aves_odb12 | ||
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Larus fuscus | GCA_963932225.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.8%[S:95.5%,D:0.3%],F:1.1%,M:3.1%,n:8338 | aves_odb10 | ||
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Linaria repens | GCA_977927345.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:95.2%[S:90.3%,D:4.9%],F:2.3%,M:2.4%,n:2874 | lamiales_odb12 | ||||
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Linaria vulgaris | GCA_948329865.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FASTA | FTP dumps | View | C:94.1%[S:89.6%,D:4.5%],F:1.9%,M:4.0%,n:2326 | eudicots_odb10 | |
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Macrosiphum cholodkovskyi | GCA_978019455.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:96.9%[S:95.6%,D:1.3%],F:1.6%,M:1.5%,n:3396 | hemiptera_odb12 | ||
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Macrosteles quadrilineatus | GCA_976628355.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.6%[S:93.3%,D:1.4%],F:3.5%,M:1.9%,n:3396 | hemiptera_odb12 | ||
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Matricaria chamomilla | GCA_964234995.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.8%[S:88.9%,D:4.9%],F:2.1%,M:4.1%,n:2326 | eudicots_odb10 | ||
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Medicago lupulina | GCA_958299785.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.3%[S:91.5%,D:2.8%],F:1.3%,M:4.4%,n:5366 | fabales_odb10 | ||
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Melampyrum sylvaticum | GCA_965112295.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.8%[S:76.2%,D:16.7%],F:4.6%,M:2.6%,n:822 | viridiplantae_odb12 | ||
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Melampyrum sylvaticum | GCA_965112295.2 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:92.1%[S:74.6%,D:17.4%],F:3.4%,M:4.5%,n:2874 | lamiales_odb12 | ||||
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Myriophyllum sibiricum | GCA_977013075.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.7%[S:90.9%,D:1.8%],F:3.0%,M:4.3%,n:2805 | eudicotyledons_odb12 | ||
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Myrrhis odorata | GCA_977930265.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:93.4%[S:85.3%,D:8.1%],F:3.1%,M:3.5%,n:2805 | eudicotyledons_odb12 | ||||
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Myzus lythri | GCA_982296965.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:96.9%[S:95.6%,D:1.4%],F:1.6%,M:1.5%,n:3396 | hemiptera_odb12 | ||||
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Nasturtium officinale | GCA_963854855.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.2%[S:52.9%,D:41.3%],F:0.8%,M:5.0%,n:4596 | brassicales_odb10 | ||
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Oxyria digyna | GCA_964035995.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.4%[S:88.5%,D:4.9%],F:3.3%,M:3.3%,n:425 | viridiplantae_odb10 | ||
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Peregrinus maidis | GCA_976984555.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:88.4%[S:86.9%,D:1.5%],F:4.9%,M:6.7%,n:3396 | hemiptera_odb12 | ||
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Peregrinus maidis | GCA_976984645.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:71.7%[S:70.2%,D:1.6%],F:5.4%,M:22.9%,n:3396 | hemiptera_odb12 | ||
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Petasites hybridus | GCA_965123105.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:98.4%[S:47.1%,D:51.3%],F:1.2%,M:0.4%,n:822 | viridiplantae_odb12 | ||
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Pohlia cruda | GCA_982319405.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:76.9%[S:68.8%,D:8.1%],F:7.8%,M:15.3%,n:2026 | embryophyta_odb12 | ||||
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Polygonum aviculare | GCA_934048045.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FASTA | FTP dumps | View | C:90.7%[S:85.2%,D:5.5%],F:1.9%,M:7.4%,n:2326 | eudicots_odb10 | |
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Populus tremula | GCA_964106015.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.9%[S:78.9%,D:16.0%],F:1.6%,M:3.5%,n:2326 | eudicots_odb10 | ||
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Potamogeton natans | GCA_965203715.2 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.7%[S:28.6%,D:64.1%],F:3.4%,M:3.9%,n:2821 | liliopsida_odb12 | ||
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Potamogeton perfoliatus | GCA_977036025.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.6%[S:39.7%,D:52.9%],F:3.5%,M:3.9%,n:2821 | liliopsida_odb12 | ||
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Primula veris | GCA_963682055.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:91.7%[S:88.4%,D:3.3%],F:3.2%,M:5.1%,n:2326 | eudicots_odb10 | ||
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Prunella vulgaris | GCA_965154465.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.4%[S:71.8%,D:23.5%],F:2.1%,M:2.5%,n:2805 | eudicotyledons_odb12 | ||
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Prunella vulgaris | GCA_965154595.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.3%[S:72.1%,D:23.2%],F:2.1%,M:2.6%,n:2805 | eudicotyledons_odb12 | ||
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Prunella vulgaris | GCA_965154595.2 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.1%[S:67.5%,D:27.6%],F:2.1%,M:2.8%,n:2874 | lamiales_odb12 | ||
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Prunus avium | GCA_965620075.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.7%[S:91.5%,D:1.2%],F:1.8%,M:5.5%,n:10071 | rosaceae_odb12 | ||
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Prunus padus | GCA_964059315.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:95.8%[S:31.0%,D:64.8%],F:1.0%,M:3.2%,n:10071 | rosaceae_odb12 | ||||
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Quercus cerris | GCA_963669245.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.3%[S:90.2%,D:4.1%],F:3.1%,M:2.6%,n:2326 | eudicots_odb10 | ||
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Quercus robur | GCA_932294415.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FASTA | FTP dumps | View | C:94.4%[S:90.5%,D:3.9%],F:2.9%,M:2.7%,n:2326 | eudicots_odb10 | |
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Rosa rugosa | GCA_958449725.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.0%[S:89.8%,D:4.2%],F:2.8%,M:3.2%,n:2326 | eudicots_odb10 | ||
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Rosa spinosissima | GCA_965112335.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:97.5%[S:17.9%,D:79.6%],F:1.4%,M:1.0%,n:2805 | eudicotyledons_odb12 | ||
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Rubus idaeus | GCA_965153425.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.3%[S:92.0%,D:2.3%],F:2.4%,M:3.4%,n:2805 | eudicotyledons_odb12 | ||
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Salix caprea | GCA_964035475.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:89.3%[S:61.2%,D:28.1%],F:1.6%,M:9.2%,n:6134 | malpighiales_odb12 | ||||
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Salix cinerea | GCA_965260955.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:88.9%[S:59.0%,D:29.9%],F:1.5%,M:9.5%,n:6134 | malpighiales_odb12 | ||||
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Salix pentandra | GCA_979017335.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:92.8%[S:18.4%,D:74.4%],F:0.6%,M:6.5%,n:6134 | malpighiales_odb12 | ||||
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Salix repens | GCA_965260945.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:88.8%[S:60.2%,D:28.6%],F:1.6%,M:9.6%,n:6134 | malpighiales_odb12 | ||
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Salix repens | GCA_965260975.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:89.2%[S:60.7%,D:28.5%],F:1.5%,M:9.3%,n:6134 | malpighiales_odb12 | ||||
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Saxifraga aizoides | GCA_965199075.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.7%[S:73.3%,D:19.4%],F:4.0%,M:3.4%,n:2805 | eudicotyledons_odb12 | ||
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Senecio sylvaticus | GCA_965199645.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:97.7%[S:22.4%,D:75.3%],F:1.4%,M:1.0%,n:2805 | eudicotyledons_odb12 | ||
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Senecio sylvaticus | GCA_965199475.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:97.6%[S:22.6%,D:75.0%],F:1.3%,M:1.1%,n:2805 | eudicotyledons_odb12 | ||
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Sherardia arvensis | GCA_948330725.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FASTA | FTP dumps | View | C:91.6%[S:87.6%,D:4.0%],F:2.0%,M:6.4%,n:2326 | eudicots_odb10 | |
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Solanum nigrum | GCA_964243065.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:97.2%[S:11.1%,D:86.1%],F:1.0%,M:1.8%,n:5950 | solanales_odb10 | ||
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Sphagnum teres | GCA_965649795.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:80.8%[S:69.1%,D:11.7%],F:6.9%,M:12.3%,n:2026 | embryophyta_odb12 | ||
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Tanacetum vulgare | GCA_964264315.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.0%[S:87.0%,D:7.0%],F:1.9%,M:4.1%,n:2326 | eudicots_odb10 | ||
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Thalictrum alpinum | GCA_979016915.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:94.2%[S:89.9%,D:4.2%],F:3.8%,M:2.0%,n:2026 | embryophyta_odb12 | ||||
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Torilis japonica | GCA_965197025.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.6%[S:84.2%,D:9.3%],F:3.1%,M:3.3%,n:2805 | eudicotyledons_odb12 | ||
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Torilis japonica | GCA_965197025.2 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:93.7%[S:84.3%,D:9.4%],F:3.1%,M:3.2%,n:2805 | eudicotyledons_odb12 | ||
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Tragopogon pratensis | GCA_964059535.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:94.0%[S:87.8%,D:6.2%],F:1.8%,M:4.2%,n:2326 | eudicots_odb10 | ||
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Triglochin maritima | GCA_963682175.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:84.9%[S:35.1%,D:49.8%],F:10.1%,M:5.0%,n:3236 | liliopsida_odb10 | ||
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Triglochin palustris | GCA_964197745.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:90.1%[S:85.0%,D:5.1%],F:5.1%,M:4.8%,n:2821 | liliopsida_odb12 | ||||
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Tussilago farfara | GCA_964605395.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:95.8%[S:59.9%,D:35.9%],F:2.5%,M:1.7%,n:2805 | eudicotyledons_odb12 | ||
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Ulmus glabra | GCA_964106905.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:89.5%[S:86.5%,D:3.0%],F:2.2%,M:8.3%,n:9329 | rosales_odb12 | ||||
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Ulmus minor | GCA_965198805.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:90.0%[S:86.8%,D:3.2%],F:2.2%,M:7.8%,n:9329 | rosales_odb12 | ||
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Urtica urens | GCA_958296335.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:88.7%[S:86.3%,D:2.4%],F:2.0%,M:9.3%,n:2326 | eudicots_odb10 | ||
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Vaccinium vitis-idaea | GCA_963854785.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.3%[S:86.8%,D:5.5%],F:3.4%,M:4.3%,n:2326 | eudicots_odb10 | ||
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Vaccinium vitis-idaea | GCA_963854785.2 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.9%[S:88.8%,D:4.1%],F:4.0%,M:3.0%,n:2805 | eudicotyledons_odb12 | ||
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Veronica anagallis-aquatica | GCA_965198525.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:95.2%[S:16.7%,D:78.5%],F:1.8%,M:3.0%,n:2874 | lamiales_odb12 | ||||
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Veronica arvensis | GCA_964211895.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:89.3%[S:85.1%,D:4.2%],F:5.0%,M:5.7%,n:2805 | eudicotyledons_odb12 | ||
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Veronica scutellata | GCA_965198585.1 | BRAKER2 | GTF GFF3 | FASTA | FTP dumps | Coming soon! | C:88.4%[S:81.4%,D:7.1%],F:5.4%,M:6.2%,n:2874 | lamiales_odb12 | ||||
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Veronica serpyllifolia | GCA_964197965.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:92.6%[S:88.0%,D:4.6%],F:1.9%,M:5.5%,n:2326 | eudicots_odb10 | ||
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Vicia sativa | GCA_964197575.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:90.8%[S:87.5%,D:3.3%],F:6.1%,M:3.1%,n:425 | viridiplantae_odb10 | ||
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Viola tricolor | GCA_965217375.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:98.6%[S:8.9%,D:89.7%],F:0.5%,M:0.8%,n:2805 | eudicotyledons_odb12 | ||
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Viola tricolor | GCA_965217365.1 | Ensembl Genebuild | GTF GFF3 | FASTA | FASTA | FASTA | FTP dumps | View | C:98.6%[S:9.9%,D:88.6%],F:0.5%,M:0.9%,n:2805 | eudicotyledons_odb12 |